Contents
schema-evaluation
Evaluation result schema
Evaluate has no PolyGeniusSchema object. This page lists the column vector,
the metric table and the artifact federation registry that evaluate$*()
results are checked against.
Columns
| Column | Meaning |
|---|---|
analysis |
The component that produced the row, e.g. "performance". |
outcome |
The outcome label. NA on redundancy rows. |
outcome.type |
"binary" or "continuous". NA on redundancy rows. |
model |
The model label, a column name of the score layer. |
model.ref |
The reference model on compare rows, the pair's second model on redundancy rows. |
stratum |
"all" or a split.by level. |
tier |
The score percentile band on stratification rows. |
tier.ref |
The reference band on stratification contrast rows. |
metric |
The metric name. analysis and metric together identify a metric. |
estimate |
The point estimate. |
lower |
The lower interval bound at conf.level. |
upper |
The upper interval bound at conf.level. |
pval |
The raw p-value. |
adj.pval |
pval adjusted with p.adjust.method. |
adj.family.id |
The adjustment family, a key into $indices$multiplicity. |
n |
The samples behind the estimate. |
n.events |
The cases among them. |
Metrics
| Analysis | Metric | Outcome type | Direction | Tested | Label |
|---|---|---|---|---|---|
performance |
auc |
binary | higher | no | AUC |
performance |
r2.liability |
binary | higher | no | Liability R² |
performance |
r.squared |
continuous | higher | no | R² |
incremental |
delta.auc |
binary | higher | no | ΔAUC |
incremental |
delta.r2.liability |
binary | higher | no | Δ liability R² |
incremental |
likelihood.ratio |
binary | none | yes | Likelihood ratio |
incremental |
delta.r.squared |
continuous | higher | no | ΔR² |
incremental |
likelihood.ratio |
continuous | none | yes | Likelihood ratio |
association |
odds.ratio |
binary | none | yes | Odds ratio |
association |
beta |
continuous | none | yes | Beta |
stratification |
outcome.rate |
binary | none | no | Case fraction |
stratification |
odds.ratio |
binary | none | yes | Odds ratio |
stratification |
outcome.mean |
continuous | none | no | Mean |
stratification |
mean.difference |
continuous | none | yes | Mean difference |
compare |
delta.auc |
binary | higher | yes | ΔAUC |
compare |
delta.r2.liability |
binary | higher | no | Δ liability R² |
compare |
delta.r.squared |
continuous | higher | no | ΔR² |
redundancy |
score.pearson |
NA | none | no | Score correlation |
redundancy |
snp.jaccard |
NA | none | no | SNP Jaccard |
redundancy |
snp.weighted.overlap |
NA | none | no | Weighted SNP overlap |
Artifacts
| Artifact | Federation-safe |
|---|---|
confusion |
no |
score.outcome.bins |
no |