Reference

The package reference is organized as a navigation tree. Parent pages summarize a topic area and point you to the next level; leaf pages contain the generated roxygen reference.

Generate	Model generation environments, GWAS sources, and algorithm specifications. 4 child items
Evaluate	Benchmarking, discrimination, calibration, incremental value, and comparison workflows. 8 child items
Compute	Cohort-level computations such as scores, kinship, embeddings, and population structure. 7 child items
Associate	Regression, mediation, Mendelian randomization, and meta-analysis interfaces. 5 child items
Visualize	Plotting interfaces for scores, associations, evaluation results, and embeddings. 4 child items
Workspace	Runtime configuration, workspace catalogs, and user-level resource inventories. 2 child items
Data Classes	Core data containers for models, cohorts, genotype files, evaluations, and associations. 3 child items
Core and Execution	Top-level engines, execution helpers, package options, and runtime logging surfaces. 3 child items
Resources and Rules	Resource registries, execution rules, and low-level engine building blocks. 6 child items
Utilities	Conversion helpers, coercions, chromosome recoding, and other supporting utilities. 13 child items