Algorithm Rules

Concrete rules used by the supported model-generation algorithms.

ClumpVariantsRule resolves one clumped.variants output by loading a GWAS resource and a matching reference panel, then running panel clumping.
Aliases: ClumpVariantsRule
Build bigsnpr LD storage rule
Aliases: BuildLDBigsnprRule
RunLdPred2Rule resolves one polygenius.model output for LDpred2.
Aliases: RunLdPred2Rule
RunLassosum2Rule resolves one polygenius.model output for lassosum2.
Aliases: RunLassosum2Rule
RunCojoRule resolves one polygenius.model output for COJO.
Aliases: RunCojoRule
Build PRS-CS LD block storage rule
Aliases: BuildLDPrscsRule
RunPrscsRule resolves one polygenius.model output for PRS-CS.
Aliases: RunPrscsRule
ThresholdClumpedRule resolves one polygenius.model output for algorithm ClumpingThresholding .
Aliases: ThresholdClumpedRule