workspace\(catalogs\)LDs

LD Catalog

Description

Inventory utility for workspace LD reference resources.

Details

Inventory utility for LD storage resources known to PolyGenius.

Use this catalog through workspace$catalogs$LDs.

Behavior

• Exposes the union of manifest entries and local cached LD storage resources.

• Treats the manifest as read-only.

• Provides view-only inventory methods in this first iteration.

Methods

Public methods

• LDs$new()

• LDs$view()

• LDs$print()

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Method new()

Initialize LD catalog.

Usage

LDs$new(manifest.path = NULL)

Arguments

manifest.path

Optional custom manifest CSV path.

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Method view()

View registered and locally cached LD storage resources.

Usage

LDs$view(name = NULL, reference.panel = NULL, build = NULL, method = NULL)

Arguments

name

Optional LD reference name filter.

reference.panel

Optional reference-panel name filter.

build

Optional genome-build key/name filter.

method

Optional LD calculation method filter.

Returns

data.frame inventory with availability flags.

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Method print()

Print LD inventory summary.

Usage

LDs$print(...)

Arguments

…

Unused.