workspace\(catalogs\)genomeBuilds

Genome Build Catalog

Description

Registry of supported genome-build identifiers for catalog normalization and validation.

Details

Registry of supported genome-build keys and canonical names used by PolyGenius catalogs.

Use this registry through workspace$catalogs$genomeBuilds.

Main methods

• view(): return the registry table.

• key(build): normalized key for one build.

• name(build): normalized canonical name for one build.

• label(build, fallback = TRUE): best-effort display label for printing.

Methods

Public methods

• GenomeBuilds$new()

• GenomeBuilds$view()

• GenomeBuilds$key()

• GenomeBuilds$name()

• GenomeBuilds$label()

• GenomeBuilds$print()

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Method new()

Initialize the registry with built-in supported builds.

Usage

GenomeBuilds$new()

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Method view()

View the registry table.

Usage

GenomeBuilds$view()

Returns

data.frame with key and build.

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Method key()

Resolve a build identifier to its canonical key.

Usage

GenomeBuilds$key(build)

Arguments

build

Character build key/name.

Returns

Single canonical build key.

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Method name()

Resolve a build identifier to its canonical name.

Usage

GenomeBuilds$name(build)

Arguments

build

Character build key/name.

Returns

Single canonical build name.

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Method label()

Canonical display label for a build value.

Usage

GenomeBuilds$label(build, fallback = TRUE)

Arguments

build

Character build key/name.

fallback

Logical; when TRUE, return the input value if unresolved.

Returns

Single display label.

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Method print()

Print a compact summary of supported builds.

Usage

GenomeBuilds$print(...)

Arguments

…

Unused.