RunCojoRule

COJO model rule

Description

RunCojoRule resolves one polygenius.model output for COJO.

Details

Reactive rule for model outputs generated by algorithm cojo.

Execution logic:

• requests GWAS input at required pval.max;

• currently returns a stub model with unchanged GWAS variants.

Super class

PolyGenius::Rule -> RunCojoRule

Methods

Public methods

• RunCojoRule$new()

• RunCojoRule$matches()

• RunCojoRule$inputs()

• RunCojoRule$requirements()

• RunCojoRule$run()

• RunCojoRule$clone()

Inherited methods

• PolyGenius::Rule$bind()
• PolyGenius::Rule$print()

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Method new()

Create the COJO rule.

Usage

RunCojoRule$new()

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Method matches()

Check whether this rule can produce the requested output.

Usage

RunCojoRule$matches(output.spec)

Arguments

output.spec

Output resource specification.

Returns

TRUE for cojo model outputs.

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Method inputs()

Build input specifications for this output.

Usage

RunCojoRule$inputs(output.spec)

Arguments

output.spec

Output resource specification.

Returns

Named list with required GWAS input.

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Method requirements()

Declare resource requirements for this rule.

Usage

RunCojoRule$requirements(output.spec, inputs)

Arguments

output.spec

Output resource specification.

inputs

Bound input values/specifications.

Returns

Named list with cores and memory.

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Method run()

Execute COJO model construction (stub).

Usage

RunCojoRule$run(output.spec, inputs, logger)

Arguments

output.spec

Output resource specification.

inputs

Named list of bound input values.

logger

Rule logger.

Returns

Rule result list with data, meta, and logs.

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Method clone()

The objects of this class are cloneable with this method.

Usage

RunCojoRule$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.