DownloadLiftoverChainRule

Download liftover chain rule

Description

Download liftover chain rule

Download liftover chain rule

Details

DownloadLiftoverChainRule materializes a liftover.chain resource by downloading the configured chain file into the resource store.

Super class

PolyGenius::Rule -> DownloadLiftoverChainRule

Methods

Public methods

• DownloadLiftoverChainRule$new()

• DownloadLiftoverChainRule$matches()

• DownloadLiftoverChainRule$inputs()

• DownloadLiftoverChainRule$requirements()

• DownloadLiftoverChainRule$run()

• DownloadLiftoverChainRule$clone()

Inherited methods

• PolyGenius::Rule$bind()
• PolyGenius::Rule$print()

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Method new()

Create the liftover-chain download rule.

Usage

DownloadLiftoverChainRule$new()

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Method matches()

Check whether this rule can produce one output spec.

Usage

DownloadLiftoverChainRule$matches(output.spec)

Arguments

output.spec

Output resource specification.

Returns

Logical.

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Method inputs()

Build dependency inputs.

Usage

DownloadLiftoverChainRule$inputs(output.spec)

Arguments

output.spec

Output resource specification.

Returns

Named list of dependency specs.

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Method requirements()

Declare runtime requirements.

Usage

DownloadLiftoverChainRule$requirements(output.spec, inputs)

Arguments

output.spec

Output resource specification.

inputs

Bound input values.

Returns

Named list with cores and memory.

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Method run()

Execute liftover-chain download.

Usage

DownloadLiftoverChainRule$run(output.spec, inputs, logger)

Arguments

output.spec

Output resource specification.

inputs

Bound input values.

logger

Rule logger.

Returns

Rule result list with data, meta, and logs.

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Method clone()

The objects of this class are cloneable with this method.

Usage

DownloadLiftoverChainRule$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.